Notes on Windows, macOS, Linux, Android, iOS, and the terminal, synced through your own server: Joplin pairs its open-source clients with Joplin Server, the official self-hosted backend that replaces Dropbox, OneDrive, or Nextcloud as the synchronization target. Notes are Markdown with inline attachments (images, PDFs, audio), organized into hierarchical notebooks and sub-notebooks with cross-cutting tags, alongside to-do lists with reminders and alarms. End-to-end encryption is the headline feature: enabled in the clients, it encrypts sync payloads on-device before upload, so the server stores blobs it cannot read - genuine protection even if the host is compromised. The desktop app offers both Rich Text and Markdown editors, extended by a plugin ecosystem, custom themes, and an Extension API for writing your own scripts; a Web Clipper for Chrome and Firefox captures full pages or screenshots straight into notebooks. Joplin Server ships as a Docker image with SQLite for evaluation and PostgreSQL for production, offers a filesystem storage driver for large content, and includes multi-user support and note sharing - all free under AGPL-3.0 when self-hosted. Notes stay in an open format, so the exit path always exists.

Standard Notes keeps your notes, files, and tags encrypted on your device before anything touches the network, meaning the server stores only ciphertext it cannot read. Cross-platform sync across desktop, mobile, and web delivers fast, conflict-free updates on unlimited devices with the same zero-knowledge guarantee that only your password can decrypt your content. The V2 server architecture condenses everything into four Docker containers consuming roughly 570MB RAM total (down from 13 containers and 1.7GB in the legacy setup), with startup under one minute. Revision history automatically preserves every version of every note, so recovering deleted text or reverting to a previous state never depends on manual backups. A nested tag system organizes thousands of notes with hierarchical categorization that goes well beyond flat folder structures, while search operates entirely on client-side decrypted content. File attachments of any type encrypt and sync alongside notes with identical end-to-end protection. Multiple editor options span plain text, Markdown with preview, and rich formatting to fit different writing workflows. Two-factor authentication via TOTP with email backup codes adds a second barrier beyond your password. An optional separate container serves the web frontend, providing browser access to your encrypted vault without depending on standardnotes.com infrastructure. With 5,500+ GitHub stars and active development, the project continues expanding editor plugins and sync improvements.

Open the page, write a Markdown note, move on - Memos is a lightweight, self-hosted service built for quick capture. Instead of folders, notebooks, and titles, it presents a timeline: open the page, write a Markdown note, and move on. Notes support headings, code blocks with syntax highlighting, task lists, tables, and file attachments, with tags auto-extracted from #hashtags in the text. Each memo carries a visibility level, private, protected (logged-in users), or public, so one instance works as a personal log, a small team wiki, or a lightweight microblog. The backend is a single Go binary with a React frontend, around 50 MB of memory at runtime and a ~20 MB Docker image, so it fits comfortably on the smallest instance size with near-zero maintenance. SQLite is the default store, with MySQL and PostgreSQL supported for multi-user deployments needing more concurrency, and full REST and gRPC APIs - Connect RPC for browsers, gRPC-Gateway for external tools - make capture scriptable from CLIs, bots, and automation platforms. Fast full-text search spans all memos, pinned notes keep references handy, and a masonry view suits visual browsing. MIT-licensed with zero telemetry; content is stored as plain Markdown in a database you control, so notes remain readable, exportable, and free of proprietary formats.

Papyra gives you a calm, private home for notes that stays as easy as sticky notes while quietly linking everything together like a wiki. Cards pin, colour, and drag into place on your desk, and opening one drops you into an editor where slash commands insert headings, checklists, tables, or maps without leaving the keyboard. Type two brackets to link another note, and backlinks gather the other direction automatically, following the note even if you rename it. Notes save themselves, and every earlier version is kept, so you can scrub back through history and restore the draft you actually wanted. Sharing a note lets several people type in it together with visible cursors, comments in threads, and mentions that bring the right person in. Private notes lock behind a PIN or your fingerprint and sit encrypted on disk, while a daily journal page collects the day with a mood and a calendar to browse the year. Search covers notes, to-dos, and attachments with highlighted matches, and image text and audio transcripts can join the index. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. GPL-3.0 licensed.

Backed by over 45,000 GitHub stars and described as the tool that replaces Notion, Evernote, and Anki in a single Docker container, SiYuan is the privacy-first knowledge management system where every paragraph, heading, and list item is a uniquely addressable content block. The block-level architecture enables bidirectional links, transclusion embeds, and SQL query blocks that dynamically aggregate content across your entire workspace, while the knowledge graph visualization maps relationship networks between documents and blocks. Built-in databases support table views with relation and rollup columns, filter composition, sorting, and template-based calculations for structured data management alongside freeform notes. The FSRS spaced repetition engine turns any content block into a flashcard with scientifically calibrated review scheduling, eliminating the need for separate memorization tools. AI integration connects to OpenAI-compatible APIs for writing assistance, translation, summarization, and Q&A chat, with semantic search using embeddings and reranking for intelligent content retrieval. The Bazaar community marketplace delivers plugins, themes, templates, and widgets through a managed extension system with TypeScript plugin APIs. End-to-end encrypted synchronization works across S3-compatible storage, WebDAV servers, or SiYuan's own cloud service, while Tesseract OCR extracts searchable text from images and the web clipper captures pages from Chrome, Edge, and Firefox. Export targets include Markdown with assets, PDF, Word, and HTML. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. AGPL-3.0 licensed.

For people whose notes number in the tens of thousands, Trilium Notes is the hierarchical note-taking application built specifically for large personal knowledge bases - actively maintained as TriliumNext. Notes arrange into arbitrarily deep trees where every note is both content and container, and cloning lets a single note live in multiple places at once - bash notes belong under both Linux and Scripting, and Trilium refuses to make you choose. A WYSIWYG editor handles rich text, tables, math, and syntax-highlighted code blocks with Markdown-style shortcuts, while dedicated note types cover Excalidraw sketches, mind maps, geo maps with GPX tracks, relation maps that visualize connections between notes, and tables with typed columns. The attribute system is the power layer: labels attach queryable metadata (#year=1999, #author), relations create named links between notes, and both inherit down the tree - feeding full-text search, saved queries, and scripting. Scripting is Trilium's deepest differentiator: JavaScript code notes run on events like note changes or hourly schedules, build custom widgets, and add server-side logic, turning the knowledge base into a programmable platform. Protected notes encrypt sensitive content, note hoisting focuses on subtrees, and the self-hosted server syncs desktop clients across devices.

TriliumNext organizes notes in an infinitely deep tree where any single note can be cloned into multiple branches without duplication, building personal knowledge bases that mirror how ideas actually connect rather than forcing a single rigid folder hierarchy. Carrying forward the original Trilium project under active community stewardship with nearly 37,000 GitHub stars, the application is built on TypeScript with a CKEditor 5 WYSIWYG editor supporting rich text, tables, images, KaTeX math expressions, Mermaid diagrams, Excalidraw canvases, mind maps, spreadsheets with XLSX and CSV import/export, and code blocks with full syntax highlighting. A built-in JavaScript scripting engine runs on both frontend and backend, enabling custom widgets, automated workflows, scheduled tasks, and direct interaction with external REST services through a typed Script API. Full-text and fuzzy search with attribute-based queries locates any note instantly across databases tested at over 100,000 notes without performance degradation. The v0.104 release introduced importers for OneNote, Notion, Google Keep, Anytype, and Obsidian alongside 16 dedicated security fixes. Per-note AES encryption, OpenID Connect authentication, and TOTP two-factor protection safeguard sensitive content. The sync server keeps desktop clients, the progressive web app, and mobile devices in lockstep with zero third-party cloud dependency. Web Clipper captures content directly from browsers. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. AGPL-3.0 licensed.

Memos, the lightweight open-source note service from the usememos project, packaged as a containerized deployment for multi-architecture Docker hosts (x86-64 and arm64): that is Usermemos. The model is frictionless capture: no folders or titles, just a chronological stream of Markdown notes with code blocks, task lists, tables, and file attachments, organized by #hashtags pulled automatically from the text. Per-memo visibility - private, protected for logged-in users, or public - lets a single instance serve as a personal journal, a shared team log, or a public microblog simultaneously. Multi-user support with authentication makes it workable for small teams, and full REST and gRPC APIs open capture and retrieval to CLIs, bots, and automation tools. The runtime is a single Go binary with a React frontend that idles around 50 MB of memory and stores content as plain Markdown in SQLite by default, with MySQL and PostgreSQL available for heavier deployments. Configuration happens through environment variables, access works over HTTP or HTTPS behind a reverse proxy, and there is no telemetry - notes stay on your server in a portable format.

A web interface for a folder of Markdown files - Flatnotes is exactly that, and the discipline of that design is why people love it. Every note is a plain .md file in a single flat directory: no database, no proprietary format, no hierarchy to maintain, no export step if you ever leave. Edit notes in the browser or open the same files in VS Code or Obsidian, sync them with Syncthing or rsync while the app is running - the Whoosh-powered search index synchronizes incrementally, so external edits just show up. The interface is a clean Vue.js app with both WYSIWYG and raw Markdown editing modes (TOAST UI Editor), instant full-text search behind the "/" shortcut with partial-match support, wikilinks for cross-note references, and automatic tag extraction from #hashtags in note bodies. Light and dark themes and a mobile-responsive layout make it pleasant everywhere. Authentication is flexible for a personal tool: none, read-only, username/password, or TOTP two-factor. A documented REST API covers create/read/update/delete for automation. The operational story is the quiet selling point - the only state is the notes folder and a rebuildable index, so backup is copying a directory. For a personal notepad that respects your data, Flatnotes nails minimal.

With over 2,200 GitHub stars and a philosophy that your notes should be files you own rather than rows in a database, ZenNotes is the keyboard-first Markdown editor that runs as a self-hosted web app backed by a Go server accessible from any browser on your network. Every note is a plain .md file in a vault directory you mount, with zero proprietary lock-in. Modal editing with real Vim motions, leader-key flows, and a command palette keeps your hands on the keyboard through edit, split, and preview modes. The rendering engine handles KaTeX math, Mermaid diagrams, TikZ graphics, and JSXGraph plots directly from Markdown syntax alongside wiki links and callout blocks. A first-party MCP server ships in the box with one-click integration for Claude Desktop and Cursor, letting AI assistants read and write the same Markdown files on disk without sync layers or duplicate copies. The bundled zen CLI provides note creation, search, tagging, task toggling, and piped capture with JSON output for shell scripting. Board views render plain CSV files as Kanban columns. Daily notes, quick capture, archive, and trash round out the vault workflow. The Go backend serves the browser frontend on port 7878 with token-based authentication, configurable browse roots, TLS proxy support, and file permission hardening at 0600/0700 defaults. Deploy via the multi-arch Docker image for linux/amd64 and linux/arm64. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. MIT licensed.

100% portability is Nanote's one non-negotiable principle as a self-hosted note-taking app. There is no database - notebooks are plain folders and notes are plain Markdown files on your filesystem, so the same notes remain fully manageable from a terminal, Notepad, or any other editor, and walking away from Nanote costs nothing because your data was never in a proprietary format to begin with. Built with Nuxt and TypeScript around the Milkdown editor, it layers modern conveniences on that plain-file foundation: fast content search across all notes using OS-optimized tooling (ugrep), native Markdown rendering, image and file attachments, and a mobile-friendly layout for reading and editing on a phone. Clever remark directives make plain text interactive - typing ::file inserts an inline upload picker, while ::today, ::now, and ::tomorrow expand to live dates and times. A fully typed REST API with validation covers automation, and access is protected by a configurable secret key. Deployment is one container with three env vars: paths for notes, uploads, and config, all bind-mountable so your Markdown lives wherever you want it - including inside an existing sync setup. AGPL-licensed and actively daily-driven by its author.

"Somewhat lightweight, low-friction" is how Silicon Notes' author describes the personal knowledge base - written after DokuWiki's editor "drove me mad" and no existing wiki quite fit. The philosophy is that small frequent annoyances compound into cognitive load with no return, so everything here is optimized for frictionless daily use. Notes are written in plaintext Markdown and rendered as clean HTML with Pygments syntax highlighting for code blocks; pages get bi-directional relationships (backlinks), so the knowledge base becomes a connected web rather than a folder tree; and full-text plus title search retrieves anything fast. A table of contents lives in the left sidebar - "where it belongs" - editable while you read without scrolling away. Page history tracks revisions for auditing and rollback, JSON export/import keeps everything portable, and the mobile layout is genuinely usable. The stack is deliberately minimal: Python and Flask with Mistune for Markdown and SQLite for storage - no big frameworks, just a few small dependencies. One honest caveat: there is no built-in authentication, so deploy it behind a VPN, private network, or reverse-proxy auth layer. For a solo engineer's brain, it is exactly enough.

Capture a thought before it evaporates: Crumbs is a self-hosted, privacy-first alternative to Google Keep for notes you would rather keep on your own server. You write rich notes with Markdown, checklists, and image attachments, then give each one a personality from twelve color themes. Hashtags organize everything without folders, pinning keeps the important notes on top, and archive and trash clear the rest out of sight. Full-text search reaches across titles, content, and tags, so last month's idea is one query away. Every note keeps a version history you can browse and restore, which turns accidental deletions and bad edits into non-events. Notes can be shared with other users on your instance, with optional email notifications over SMTP for share alerts and account events. The installable PWA works offline through IndexedDB with last-write-wins CRDT sync, so a note captured on a plane reconciles when you land. Accounts are protected with Argon2 password hashing, and Google, GitHub, or any OIDC provider can handle sign-in instead. A built-in MCP server even lets AI assistants manage your notes on your behalf. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. MIT licensed.

No external database cluster to babysit, no proprietary cloud lock-in, and no bloated workspace hierarchy: Jotty stores every note, checklist, and Kanban board as plain Markdown and JSON files inside a single folder on your server. Need a quick grocery list with nested categories, progress bars, and drag-and-drop reordering? Spin one up in seconds, or flip any list into a multi-column Kanban project board with custom statuses, due-date calendar views, and a built-in time tracker. Write technical documentation in a TipTap-powered WYSIWYG and Markdown editor featuring syntax-highlighted code blocks, GitHub-flavored callouts, embedded Draw.io and Excalidraw diagrams, and OpenPGP client-side encryption for sensitive records. Connect ideas across your workspace using Obsidian-compatible wikilinks, inline mention suggestions, backlinks, and an interactive 2D and 3D knowledge graph that maps relationships between tasks and notes. Share individual notes or live Kanban boards publicly via customizable read-only links, or start the optional Model Context Protocol (MCP) companion container so AI assistants like Claude and Cursor can query your notes and check off items through your scoped REST API key. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. AGPL-3.0 licensed.

PenX delivers an open-source structured note-taking application that functions as a personal database disguised as an elegant editor — combining the outline workflow of Workflowy and Roam Research with the structured data capabilities of Tana through MetaTags that transform every note into a queryable database record. The local-first architecture stores all data on-device using PGLite, an in-process PostgreSQL-compatible engine, ensuring data ownership regardless of cloud connectivity. End-to-end encryption protects all synchronized data so that even the sync server cannot read your notes, tasks, ideas, or documents. GitHub-based version control provides out-of-the-box backup and history with full commit-level recovery. MetaTags are the core innovation — attaching structured tags to any note converts it into a database entry with typed fields, enabling table views, filters, and queries across your knowledge base without imposing rigid folder hierarchies. The daily notes workflow encourages free-form capture while MetaTags handle organization automatically, letting you record thoughts without deciding physical location upfront. AI-driven features assist with content generation, summarization, and intelligent search across your personal data hub. Real-time sync keeps web, desktop, and mobile in perfect alignment. Cross-platform availability includes web, desktop for Windows, macOS, and Linux, iOS, and Chrome extension. Deploy the web service via Next.js with pnpm using tRPC and Prisma. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. AGPL-3.0 licensed.

Real-time collaborative Markdown behind your own firewall: HedgeDoc (formerly CodiMD, descended from HackMD's open-source edition) keeps team notes on team infrastructure. Share a note's URL and collaborators are editing together instantly - live cursors, changes appearing keystroke by keystroke - in a three-mode interface that toggles between raw Markdown, rendered preview, and side-by-side split. The Markdown dialect is extended where engineers need it: Mermaid, Graphviz, and Vega-Lite diagrams, MathJax for equations, syntax-highlighted code blocks, embedded content, and a presentation mode that turns a note into reveal.js slides with a single YAML header. A dropdown permission system controls each note - freely editable, limited to signed-in users, or locked read-only - and published notes become clean read-only pages for wider distribution. Revisions track every change with the ability to revert to any earlier version. The AGPL-3.0 codebase is light enough to run on a Raspberry Pi and deploys via Docker with PostgreSQL, MySQL, or SQLite. Authentication covers LDAP, SAML, OAuth2, and email. It deliberately stays a focused document editor - no page trees or kanban - and does that one job with excellent keyboard-first ergonomics for meeting notes, RFCs, runbooks, and shared scratchpads.

Every line an indentable bullet, every bullet a first-class block that can be referenced, embedded, and queried anywhere: Logseq is a privacy-first, local-first knowledge platform built around the block outliner. The daily journal is the system's beating heart - each day opens a fresh date-stamped page where tasks, meeting notes, and fleeting ideas land as blocks without filing decisions, then connect later through [[wikilinks]] with automatic bidirectional backlinks and ((block references)) that transclude any bullet into any page. Everything persists as plain Markdown or Org-mode files on disk - git-friendly, greppable, and owned forever, with sync via iCloud, Dropbox, Syncthing, Git, or an optional end-to-end encrypted service. Built-in tooling goes beyond notes: TODO/DOING task states with scheduling, native PDF annotation with area highlights, spaced-repetition flashcards, whiteboards for visual thinking, Zotero integration for researchers, and Datalog-powered queries that build dynamic views across the entire graph. A marketplace of hundreds of community plugins and themes adds AI chat, Ollama local-model integration, and custom workflows. Written in Clojure/ClojureScript, AGPL-3.0 licensed with 320+ contributors, and completely free - the local-first Roam for people who refuse subscriptions and lock-in.

The entire wiki - content, code, and interface - is built from "tiddlers," small addressable units of information that link, transclude, tag, and filter into each other: TiddlyWiki is a non-linear personal notebook with a design philosophy unlike anything else in this catalog. Instead of pages in a hierarchy, you compose views by pulling tiddlers together on demand, which is why researchers, zettelkasten practitioners, and GTD devotees have sworn by it for two decades. The whole application is JavaScript, and the UI itself is written in hackable WikiText - customization goes as deep as rewriting the interface from inside the wiki. Self-hosting runs the Node.js version, which upgrades the classic single-HTML-file architecture in the ways that matter for a server: every tiddler is stored as an individual text file (Git-friendly, organizable), edits save through the HTTP API from any modern browser including phones, and one installation can serve multiple wikis blending shared and unique content. The plugin ecosystem covers graph visualizations, themes, languages, and hundreds of community extensions, declared per-wiki in a simple tiddlywiki.info file; the newer MultiWikiServer plugin adds multi-user accounts and tiddler sharing. Your notes stay usable for decades, independent of any corporation - the project's founding promise. BSD-licensed.

Capture fleeting thoughts as interactive flash cards and transform unorganized notes into an AI-searchable personal brain with Blinko. Users can jot down rapid notes, format rich markdown documents with code snippets and task lists, and attach multimedia files through a responsive web interface. An integrated retrieval-augmented generation engine indexes every note into vector embeddings, allowing users to query their entire personal archive using conversational natural language. You can connect local Ollama models or remote providers such as OpenAI, DeepSeek, Anthropic, and Grok to summarize lengthy entries and suggest hierarchical classification tags automatically. The interactive daily review interface presents random cards to help review, organize, or archive older insights before they are forgotten. Built-in tools include an integrated global music player for focused writing sessions, custom RSS feed ingestion, and password-protected note sharing with configurable expiration dates. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. GPL-3.0 licensed.

Your team's knowledge already lives in a folder of Markdown files, and CollabMD turns that exact folder into a shared workspace everyone can edit together in the browser, with nothing to migrate and no database swallowing your notes. Point it at an Obsidian vault, a plain docs directory, or a git-backed repository and the filesystem stays the source of truth: files are never moved, renamed, or deleted unless someone does it deliberately in the app. Several people can type in the same document at once with live cursors and presence indicators, follow a collaborator's view while they present, and drop comments anchored to a specific line or text selection instead of scattering feedback across chat threads. Edits made outside the browser, in Obsidian or any text editor, sync back into open documents automatically, so local and remote work never fork. Diagrams are first-class citizens: Mermaid, PlantUML, Structurizr C4 models, Excalidraw canvases, and draw.io files all open and render beside your prose, and a git panel lets you review changes and commit with a message without leaving the tab. Global full-text search, wiki-links with backlinks, team chat, file uploads, and optional password or Google sign-in round out a workspace that respects how your files already live. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. MIT licensed.